Analysis of SSR Information in N.tomentosiformis Goodspeed genome

WANG Weifeng; CHAO Jiangtao; GONG Daping; WANG Lu; LI Fengxia; CHEN Yaqiong; SUN Yuhe

doi:10.3969/j.issn.1007-5119.2011.03.007

WANG Weifeng, CHAO Jiangtao, GONG Daping, WANG Lu, LI Fengxia, CHEN Yaqiong, SUN Yuhe. Analysis of SSR Information in N.tomentosiformis Goodspeed genome[J]. CHINESE TOBACCO SCIENCE, 2011, 32(3): 32-35. DOI: 10.3969/j.issn.1007-5119.2011.03.007

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Analysis of SSR Information in N.tomentosiformis Goodspeed genome

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By searching N. tomentosiformis Goodspeed genome DNA with SSRFINDER, 6441 SSRs were identified from 5227 scaffold. Total length 303 963bp of SSRs occupied approximately 0.12‰ of genome DNA. The average distance between SSRs was about 400 kb. Dinucleotide and trinucleotide motifs were most abundant classes, 45.2% and 49.6% respectively. The repeats of motifs from 10-20 accounted for 74.6% of the total SSRs.

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Analysis of SSR Information in N.tomentosiformis Goodspeed genome

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