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    曹廷茂, 罗贞宝, 刘奇源, 张民, 刘一灵, 刘仁祥, 李德仑, 李振华. 基于表型组和转录组数据研究光对烟草早期幼苗发育的影响[J]. 中国烟草科学, 2023, 44(5): 45-54. DOI: 10.13496/j.issn.1007-5119.2023.05.006
    引用本文: 曹廷茂, 罗贞宝, 刘奇源, 张民, 刘一灵, 刘仁祥, 李德仑, 李振华. 基于表型组和转录组数据研究光对烟草早期幼苗发育的影响[J]. 中国烟草科学, 2023, 44(5): 45-54. DOI: 10.13496/j.issn.1007-5119.2023.05.006
    CAO Tingmao, LUO Zhenbao, LIU Qiyuan, ZHANG Min, LIU Yiling, LIU Renxiang, LI Delun, LI Zhenhua. Study of Light-Regulated Early Seedling Development in Tobacco through Phenomic and Transcriptomic Data Analysis[J]. CHINESE TOBACCO SCIENCE, 2023, 44(5): 45-54. DOI: 10.13496/j.issn.1007-5119.2023.05.006
    Citation: CAO Tingmao, LUO Zhenbao, LIU Qiyuan, ZHANG Min, LIU Yiling, LIU Renxiang, LI Delun, LI Zhenhua. Study of Light-Regulated Early Seedling Development in Tobacco through Phenomic and Transcriptomic Data Analysis[J]. CHINESE TOBACCO SCIENCE, 2023, 44(5): 45-54. DOI: 10.13496/j.issn.1007-5119.2023.05.006

    基于表型组和转录组数据研究光对烟草早期幼苗发育的影响

    Study of Light-Regulated Early Seedling Development in Tobacco through Phenomic and Transcriptomic Data Analysis

    • 摘要: 为深入解析光对烟草早期幼苗发育的调控机理,以烤烟品种CV87为试材,设置12 h光周期和持续黑暗2个处理,采用表型组学研究了烟草种子培育第1~9天的形态变化,在此基础上采用转录组学研究了其发育第4天基因表达网络差异。结果表明,光下种子发芽势和发芽率提高约30%,子叶开口长增加约2 cm,而下胚轴长度缩短约2 cm。在早期幼苗发育阶段有551个基因差异表达受光诱导,其中364个表达上调,187个表达下调。551个基因中有28个在蛋白水平存在互作关系,其中包括AMT1-3PSAKLHCB5等15个上调表达基因和OLEO1LEA7PDF2.3等13个下调表达基因。GO富集表明,这28个DEGs主要与光合作用、光系统、植物激素响应有关。综上所述,本研究解析了烟草早期幼苗发育过程中响应光信号的表型变化,并通过转录组分析挖掘到一些调控表型差异相关基因,这些结果为进一步研究光环境对烟草萌发和早期幼苗发育的影响提供了参考。

       

      Abstract: To delve into the intricate mechanisms governing the regulation of early seedling development in tobacco in response to light, the tobacco variety CV87 was chosen as the experimental material. Two treatments were implemented: a 12-hour light period and a continuous darkness, allowing for a comprehensive phenotypic study of morphological changes during the first nine days of tobacco seed incubation. Building upon this foundation, a transcriptomic analysis was employed specifically on the fourth day of development to investigate differential gene expression networks. The findings revealed that seed germination vigor and germination rate showed an increase of approximately 30% under light conditions. Furthermore, the elongation of cotyledon opening increased by approximately 2 cm, while the length of the hypocotyl decreased by approximately 2 cm. During the early stages of seedling development, 551 genes exhibited differential expression induced by light, with 364 genes being upregulated and 187 genes being downregulated. Among these 551 genes, 28 of them were found to interact at the protein level, including upregulated genes such as AMT1-3, PSAK, and LHCB5, as well as downregulated genes such as OLEO1, LEA7, and PDF2.3. Gene Ontology (GO) enrichment analysis demonstrated that these 28 differentially expressed genes were primarily associated with photosynthesis, light systems, and plant hormone responses. In conclusion, this study elucidates the phenotypic variations during early tobacco seedling development in response to light signals. Through transcriptomic analysis, several regulatory genes associated with the observed phenotypic differences were uncovered. These findings serve as a foundation for further research on the impact of light environment on tobacco germination and early seedling development.

       

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