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    高晓明, 张泽坤, 王卫锋, 刘贯山, 李凤霞, 崔萌萌, 孙玉合. 烟草NtRAX基因的克隆和序列分析[J]. 中国烟草科学, 2012, 33(5): 14-18. DOI: 10.3969/j.issn.1007-5119.2012.05.003
    引用本文: 高晓明, 张泽坤, 王卫锋, 刘贯山, 李凤霞, 崔萌萌, 孙玉合. 烟草NtRAX基因的克隆和序列分析[J]. 中国烟草科学, 2012, 33(5): 14-18. DOI: 10.3969/j.issn.1007-5119.2012.05.003
    GAO Xiaoming, ZHANG Zekun, WANG Weifang, LIU Guanshan, LI Fengxia, CUI Mengmeng, SUN Yuhe. Cloning and Sequence Analysis of NtRAX Gene in Tobacco[J]. CHINESE TOBACCO SCIENCE, 2012, 33(5): 14-18. DOI: 10.3969/j.issn.1007-5119.2012.05.003
    Citation: GAO Xiaoming, ZHANG Zekun, WANG Weifang, LIU Guanshan, LI Fengxia, CUI Mengmeng, SUN Yuhe. Cloning and Sequence Analysis of NtRAX Gene in Tobacco[J]. CHINESE TOBACCO SCIENCE, 2012, 33(5): 14-18. DOI: 10.3969/j.issn.1007-5119.2012.05.003

    烟草NtRAX基因的克隆和序列分析

    Cloning and Sequence Analysis of NtRAX Gene in Tobacco

    • 摘要: 根据GenBank中拟南芥RAX基因序列, 在烟草EST数据库中进行Blastp检索, 获得与之同源性较高的蛋白质序列, 选取同源性最高的蛋白质序列所对应的核酸序列, 设计引物, 获得中间片段, 再运用中间片段设计引物, 应用RACE方法获得其5′和3′末端cDNA序列, 将获得的3段序列拼接, 结合全长克隆测序验证, 获得一个新的普通烟草基因, 将其命名为NtRAX(NCBI登录号为JQ228591)。NtRAX的cDNA全长为1112 bp, 5′端非编码区96 bp, 3′端非编码区62 bp, 编码区长度为954 bp, 编码317个氨基酸, 预测的分子量是35.42 KDa。对该基因进行序列分析和功能预测, 得出该基因属于MYB基因家族, 是具有转录激活活性的烟草腋芽分生组织形成的调控基因。

       

      Abstract: Based on Arabidopsis RAX gene sequence in GenBank, we conducted a Blastp search in tobacco EST database, and acquired a high homology with the protein sequence, then selected the highest protein sequence homology to the corresponding nucleic acid sequences to design primers, obtained the middle fragment, then used it to design primers, obtained the 5 'and 3' ends of the cDNA sequence by RACE strategy, a gene named NtRAX (NCBI accession number JQ228591) was obtained by splicing three cDNA sequences and sequencing full-length cloning. The full-length cDNA of NtRAX is 1112bp long with 96bp 5′-UTR, 62bp3′-UTR and 954bp coding sequence. The deduced amino acid is 641 AA long. Predicted molecular weight is 35.42KDa. NtRAX was predicted a tobacco axillary meristem formation regulatory genes with transcriptional activation activity,belonged to the MYB gene family.

       

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